ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8cf5HH1 - ECOD Domain | ECOD

ECOD/Domains/e8cf5HH1

e8cf5HH1

UID: 003072030

PDB

Range: HH:2-297
PDB: 8CF5 chain HH(all domains)

Molecule: 60S ribosomal protein L5

3D Structure

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Related Domains

Browse other domains in Ribosomal_L18_c,Ribosomal_L5e →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyRibosomal_L18_c,Ribosomal_L5e(2484.1.1.69)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF14204Ribosomal_L18_c

Ribosomal L18 C-terminal region

PF17144Ribosomal_L5e

Ribosomal large subunit proteins 60S L5, and 50S L18

ClanCL0267S11_L18p

External Links

ECOD PDB View: 8CF5 RCSB PDB: 8CF5 PDBe: 8CF5

Downloads

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