ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8cgmB1 - ECOD Domain | ECOD

ECOD/Domains/e8cgmB1

e8cgmB1

UID: 003072272

PDB

Range: B:0-215
PDB: 8CGM chain B(all domains)

Molecule: Outer membrane lipoprotein carrier protein LolA

3D Structure

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Related Domains

Browse other domains in LolA_2 →

Classification

AArchitecturebeta meanders(a.2)

XX-groupLipoprotein localization factors LolAB(71)

HH-groupLipoprotein localization factors LolAB(71.1)

TT-groupLipoprotein localization factors LolAB(71.1.1)

FFamilyLolA_2(71.1.1.7)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Formic acid, 2-(N-morpholino)ethanesulfonic acid)

Formic acidFMT
DrugBank DB01942
2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Shown in the structure viewer.

Pfam Families

Outer membrane lipoprotein carrier protein LolA

ClanCL0048LolA_LolB

External Links

ECOD PDB View: 8CGM RCSB PDB: 8CGM PDBe: 8CGM

Downloads

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Drug annotations from DrugDomain.