ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8dmlA1 - ECOD Domain | ECOD

ECOD/Domains/e8dmlA1

e8dmlA1

UID: 003074006

PDB

Range: A:165-253
PDB: 8DML chain A(all domains)

Molecule: VtrA

3D Structure

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Related Domains

Browse other domains in VtrA_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupdsRBD-like(330)

HH-groupVtrA protein periplasmic domain(330.15)

TT-groupVtrA protein periplasmic domain(330.15.1)

FFamilyVtrA_C(330.15.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

VtrA C-terminal periplasmic domain

External Links

ECOD PDB View: 8DML RCSB PDB: 8DML PDBe: 8DML

Downloads

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