ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8dmqC1 - ECOD Domain | ECOD

ECOD/Domains/e8dmqC1

e8dmqC1

UID: 003074012

PDB

Range: C:1-75
PDB: 8DMQ chain C(all domains)

Molecule: Ubiquitin

3D Structure

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Related Domains

Browse other domains in ubiquitin →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyubiquitin(221.1.1.2)

Ligands

in contact, ≤ 4 Å

METHYL 4-AMINOBUTANOATEGVE

+ 2 additives (1,2-ETHANEDIOL, Citrate anion)

1,2-ETHANEDIOLEDO
Citrate anionFLC

Pfam Families

PF00240ubiquitin

Ubiquitin family

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 8DMQ RCSB PDB: 8DMQ PDBe: 8DMQ

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.