ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8dxiB2 - ECOD Domain | ECOD

ECOD/Domains/e8dxiB2

e8dxiB2

UID: 003074576

PDB

Range: B:305-428
PDB: 8DXI chain B(all domains)

Molecule: p51 RT

3D Structure

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Related Domains

Browse other domains in RVT_connect →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRNaseH-like domain in reverse transcriptase(2484.5)

TT-groupRNaseH-like domain in reverse transcriptase(2484.5.1)

FFamilyRVT_connect(2484.5.1.1)

Ligands

in contact, ≤ 4 Å

[1-(4-fluorophenyl)-5-methyl-1H-pyrazol-4-yl]methanolFMQ

+ 2 additives (Sulfate ion, Dimethyl sulfoxide)

Sulfate ionSO4
DrugBank DB14546
Dimethyl sulfoxideDMS

Pfam Families

PF06815RVT_connect

Reverse transcriptase connection domain

External Links

ECOD PDB View: 8DXI RCSB PDB: 8DXI PDBe: 8DXI

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.