ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8dxkA3 - ECOD Domain | ECOD

ECOD/Domains/e8dxkA3

e8dxkA3

UID: 003074587

PDB

Range: A:429-554
PDB: 8DXK chain A(all domains)

Molecule: Reverse transcriptase/ribonuclease H

3D Structure

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Related Domains

Browse other domains in RNase_H →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyRNase_H(2484.1.1.4)

Ligands

in contact, ≤ 4 Å

4-bromo-1H-pyrazoleBYZ
Magnesium ionMG
metal

+ 3 additives (Dimethyl sulfoxide, Sulfate ion, 1,2-ETHANEDIOL)

Dimethyl sulfoxideDMS

Pfam Families

PF00075RNase_H

RNase H

ClanCL0219RNase_H

External Links

ECOD PDB View: 8DXK RCSB PDB: 8DXK PDBe: 8DXK

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01093

Sulfate ionSO4

DrugBank DB14546

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.