ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8dxkA4 - ECOD Domain | ECOD

ECOD/Domains/e8dxkA4

e8dxkA4

UID: 003074588

PDB

Range: A:-1-239
PDB: 8DXK chain A(all domains)

Molecule: Reverse transcriptase/ribonuclease H

3D Structure

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Related Domains

Browse other domains in RVT_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyRVT_1(304.48.1.1)

Ligands

in contact, ≤ 4 Å

RilpivirineT27
drugDrugBank DB08864
4-bromo-1H-pyrazoleBYZ

+ 2 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL)

Dimethyl sulfoxideDMS
1,2-ETHANEDIOL

Pfam Families

Reverse transcriptase (RNA-dependent DNA polymerase)

ClanCL0027RdRP

External Links

ECOD PDB View: 8DXK RCSB PDB: 8DXK PDBe: 8DXK

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.