ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8fd6A7 - ECOD Domain | ECOD

ECOD/Domains/e8fd6A7

e8fd6A7

UID: 003079140

PDB

Range: A:416-592
PDB: 8FD6 chain A(all domains)

Molecule: Cytoplasmic dynein 1 heavy chain 1,Serine--tRNA ligase

3D Structure

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Related Domains

Browse other domains in AAA_6 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyAAA_6(2004.1.1.180)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Magnesium ionMG
metal
Vanadate ion

Pfam Families

Hydrolytic ATP binding site of dynein motor region

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 8FD6 RCSB PDB: 8FD6 PDBe: 8FD6

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.