ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2hvsA1 - ECOD Domain | ECOD

ECOD/Domains/e2hvsA1

e2hvsA1

UID: 000307953

PDB

Range: A:0-231
PDB: 2HVS chain A(all domains)
UniProt: P32277 (all domains)
Gene: Y10A

Molecule: T4 RNA Ligase 2

3D Structure

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Related Domains

Browse other domains in RNA_ligase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyRNA_ligase(206.1.3.23)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131within 5 Å only

+ 1 additive (2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL)

2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOLBTB

Pfam Families

PF09414RNA_ligase

RNA ligase

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 2HVS RCSB PDB: 2HVS PDBe: 2HVS UniProt: P32277

Downloads

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within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.