ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8fnqG1 - ECOD Domain | ECOD

ECOD/Domains/e8fnqG1

e8fnqG1

UID: 003080776

PDB

Range: G:49-213
PDB: 8FNQ chain G(all domains)

Molecule: Lamina-associated polypeptide 2, isoform alpha,Integrase chimera

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
4-amino-N-[(2,4-difluorophenyl)methyl]-1-hydroxy-6-(6-hydroxyhexyl)-2-oxo-1,2-dihydro-1,8-naphthyridine-3-carboxamideOZ1
Zinc ionZN

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 8FNQ RCSB PDB: 8FNQ PDBe: 8FNQ

Downloads

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metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.