ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8h53A2 - ECOD Domain | ECOD

ECOD/Domains/e8h53A2

e8h53A2

UID: 003089017

PDB

Range: A:213-548
PDB: 8H53 chain A(all domains)

Molecule: Asparagine--tRNA ligase, cytoplasmic

3D Structure

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Related Domains

Browse other domains in tRNA-synt_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA-synt_2(314.1.1.1)

Ligands

in contact, ≤ 4 Å

Imidodiphosphoric acid2PN
4-AMINO-1,4-DIOXOBUTAN-2-AMINIUM ADENOSINE-5'-MONOPHOSPHATE4AD
Magnesium ionMG

Pfam Families

PF00152tRNA-synt_2

tRNA synthetases class II (D, K and N)

ClanCL0040tRNA_synt_II

External Links

ECOD PDB View: 8H53 RCSB PDB: 8H53 PDBe: 8H53

Downloads

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metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.