ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8i07F3 - ECOD Domain | ECOD

ECOD/Domains/e8i07F3

e8i07F3

UID: 003090769

PDB

Range: F:363-593
PDB: 8I07 chain F(all domains)

Molecule: Glyoxylate carboligase

3D Structure

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Related Domains

Browse other domains in TPP_enzyme_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyTPP_enzyme_C(7574.1.1.5)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
Ubiquinone Q1UQ1
drugDrugBank DB08689

Pfam Families

PF02775TPP_enzyme_C

Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

ClanCL0254THDP-binding

External Links

ECOD PDB View: 8I07 RCSB PDB: 8I07 PDBe: 8I07

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

2-oxidanylethanal

Magnesium ionMG

metal

Thiamine diphosphateTPP

Shown in the structure viewer. Drug annotations from DrugDomain.