ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8i6bA1 - ECOD Domain | ECOD

ECOD/Domains/e8i6bA1

e8i6bA1

UID: 003090994

PDB

Range: A:-1-227
PDB: 8I6B chain A(all domains)

Molecule: Uracil-DNA glycosylase

3D Structure

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Related Domains

Browse other domains in UDG →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupUracil-DNA glycosylase-like(7569)

HH-groupUracil-DNA glycosylase-like(7569.1)

TT-groupUracil-DNA glycosylase-like(7569.1.1)

FFamilyUDG(7569.1.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Sodium ionNA
metal
5-oxidanyl-1~{H}-pyrimidine-2,4-dioneODF

+ 2 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL)

Pfam Families

Uracil DNA glycosylase superfamily

ClanCL0771UDG-like

External Links

ECOD PDB View: 8I6B RCSB PDB: 8I6B PDBe: 8I6B

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Dimethyl sulfoxideDMS

DrugBank DB01093

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.