ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2fguB1 - ECOD Domain | ECOD

ECOD/Domains/e2fguB1

e2fguB1

UID: 000309218

PDB

Range: B:1-99
PDB: 2FGU chain B(all domains)
UniProt: P03369 (all domains)
Gene: gag-pol

Molecule: Protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

Quinaldic AcidQNC
drugDrugBank DB02428
AsparagineASN
drugDrugBank DB00174within 5 Å only

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 2FGU RCSB PDB: 2FGU PDBe: 2FGU UniProt: P03369

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(2S)-2-amino-3-phenylpropane-1,1-diol

drugDrugBank DB07910within 5 Å only

2-METHYL-DECAHYDRO-ISOQUINOLINE-3-CARBOXYLIC ACIDDIQ

Tertiary-butylamineNTB

within 5 Å only

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.