ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1r0811 - ECOD Domain | ECOD

ECOD/Domains/e1r0811

e1r0811

UID: 000030924

PDB

Range: 1:17-289
PDB: 1R08 chain 1(all domains)
UniProt: P03303 (all domains)

Molecule: HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)

3D Structure

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Related Domains

Browse other domains in Rhv →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv(10.2.1.1)

Ligands

in contact, ≤ 4 Å

5-(5-(2,6-dichloro-4-(4,5-dihydro-2-oxazolyl)phenoxy)pentyl)-3-(hydroxyethyl oxymethyleneoxymethyl) isoxazoleW42
drugDrugBank DB08721

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

picornavirus capsid protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 1R08 RCSB PDB: 1R08 PDBe: 1R08 UniProt: P03303

Downloads

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