ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1mqtC1 - ECOD Domain | ECOD

ECOD/Domains/e1mqtC1

e1mqtC1

UID: 000031009

PDB

Range: C:1-238
PDB: 1MQT chain C(all domains)
UniProt: Q8B8X4 (all domains)
Gene: 1ABCD

Molecule: Polyprotein Capsid Protein

3D Structure

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Related Domains

Browse other domains in Rhv →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv(10.2.1.1)

Ligands

in contact, ≤ 4 Å

OCTANOIC ACID (2-HYDROXY-1-HYDROXYMETHYL-HEPTADEC-3-ENYL)-AMIDESPL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

picornavirus capsid protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 1MQT RCSB PDB: 1MQT PDBe: 1MQT UniProt: Q8B8X4

Downloads

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