ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8sqkA1 - ECOD Domain | ECOD

ECOD/Domains/e8sqkA1

e8sqkA1

UID: 003105094

PDB

Range: A:1-929
PDB: 8SQK chain A(all domains)

Molecule: RNA-directed RNA polymerase nsp12

3D Structure

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Related Domains

Browse other domains in RdRP_1,CoV_RPol_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyRdRP_1,CoV_RPol_N(304.48.1.9)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
5'-O-[(R)-hydroxy(thiophosphonooxy)phosphoryl]guanosineVSN
Zinc ionZN

Pfam Families

Viral RNA-dependent RNA polymerase

ClanCL0027RdRP

PF06478CoV_RPol_N

Coronavirus RNA-dependent RNA polymerase, N-terminal

External Links

ECOD PDB View: 8SQK RCSB PDB: 8SQK PDBe: 8SQK

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.