ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1nd3A1 - ECOD Domain | ECOD

ECOD/Domains/e1nd3A1

e1nd3A1

UID: 000031073

PDB

Range: A:1-285
PDB: 1ND3 chain A(all domains)
UniProt: Q82122 (all domains)

Molecule: coat protein VP1

3D Structure

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Related Domains

Browse other domains in Rhv_5 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv_5(10.2.1.69)

Ligands

in contact, ≤ 4 Å

PleconarilW11
drugDrugBank DB05105
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Picornavirus coat protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 1ND3 RCSB PDB: 1ND3 PDBe: 1ND3 UniProt: Q82122

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