ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e8upiA2 - ECOD Domain | ECOD

ECOD/Domains/e8upiA2

e8upiA2

UID: 003108939

PDB

Range: A:11-45,A:165-267,A:488-520
PDB: 8UPI chain A(all domains)

Molecule: Peptide ABC transporter substrate-binding protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_5(7523.1.1.3)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
AminoserineSET

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer.

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 8UPI RCSB PDB: 8UPI PDBe: 8UPI

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.