ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2c97E1 - ECOD Domain | ECOD

ECOD/Domains/e2c97E1

e2c97E1

UID: 000311580

PDB

Range: E:15-160
PDB: 2C97 chain E(all domains)
UniProt: P9WHE9 (all domains)
Gene: ribH

Molecule: 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE

3D Structure

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Related Domains

Browse other domains in DMRL_synthase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupLumazine synthase(2007.1.13)

FFamilyDMRL_synthase(2007.1.13.1)

Ligands

in contact, ≤ 4 Å

(4R,5R)-1,2-dithiane-4,5-diolDTD
drugDrugBank DB01822
4-(6-CHLORO-2,4-DIOXO-1,2,3,4-TETRAHYDROPYRIMIDIN-5-YL) BUTYL PHOSPHATEJCL
drugDrugBank DB08016

Pfam Families

PF00885DMRL_synthase

6,7-dimethyl-8-ribityllumazine synthase

External Links

ECOD PDB View: 2C97 RCSB PDB: 2C97 PDBe: 2C97 UniProt: P9WHE9

Downloads

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Potassium ionK

metal

+ 2 additives (Acetate, (4r)-2-Methylpentane-2,4-Diol)

AcetateACT
DrugBank DB14511
(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.