ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1kxgF1 - ECOD Domain | ECOD

ECOD/Domains/e1kxgF1

e1kxgF1

UID: 000031340

PDB

Range: F:142-285
PDB: 1KXG chain F(all domains)
UniProt: Q9Y275 (all domains)
Gene: TNFSF13B

Molecule: B lymphocyte stimulator

3D Structure

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Related Domains

Browse other domains in TNF →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupTNF-like(10.3)

TT-groupTNF-like(10.3.1)

FFamilyTNF(10.3.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 2 additives (Citric acid, 1,4-Dioxane)

Citric acidCIT
DrugBank DB04272
1,4-Dioxane

Pfam Families

TNF(Tumour Necrosis Factor) family

ClanCL0100C1q_TNF

External Links

ECOD PDB View: 1KXG RCSB PDB: 1KXG PDBe: 1KXG UniProt: Q9Y275

Downloads

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DrugBank DB03316

Shown in the structure viewer. Drug annotations from DrugDomain.