ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q12173_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q12173_F1_nD2

Q12173_F1_nD2

UID: 003173013

AlphaFold

Range: 111-185
AlphaFold: AF-Q12173
UniProt: Q12173 (all domains)
Gene: TY3A-G

Protein: Transposon Ty3-G Gag polyprotein (Gag3) (Transposon Ty3-1 protein A) (TY3A) [Cleaved into: Capsid protein (CA) (p24); Spacer peptide p3; Nucleocapsid protein p9 (NC) (NCp9) (p7)]

3D Structure

Loading viewer...

Related Domains

Browse other domains in Ty3_capsid →

Classification

AArchitecturealpha bundles(a.7)

XX-groupRetrovirus capsid protein(170)

HH-groupRetrovirus capsid protein-C(170.1)

TT-groupRetrovirus capsid protein-C(170.1.1)

FFamilyTy3_capsid(170.1.1.7)

Pfam Families

PF19259Ty3_capsid

Ty3 transposon capsid-like protein

ClanCL0523GAG-polyprotein

External Links

AlphaFold DB: Q12173 UniProt: Q12173

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 111-185