ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q99219_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q99219_F1_nD1

Q99219_F1_nD1

UID: 003173030

AlphaFold

Range: 31-105
AlphaFold: AF-Q99219
UniProt: Q99219 (all domains)
Gene: TY3A-I

Protein: Transposon Ty3-I Gag polyprotein (Gag3) (Transposon Ty3-2 protein A) (TY3A) [Cleaved into: Capsid protein (CA) (p24); Spacer peptide p3; Nucleocapsid protein p9 (NC) (p7)]

3D Structure

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Related Domains

Browse other domains in Ty3_capsid →

Classification

AArchitecturealpha bundles(a.7)

XX-groupRetrovirus capsid protein(170)

HH-groupRetrovirus capsid protein-C(170.1)

TT-groupRetrovirus capsid protein-C(170.1.1)

FFamilyTy3_capsid(170.1.1.7)

Pfam Families

PF19259Ty3_capsid

Ty3 transposon capsid-like protein

ClanCL0523GAG-polyprotein

External Links

AlphaFold DB: Q99219 UniProt: Q99219

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 31-105