ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P09880_F1_nD4 - ECOD Domain | ECOD

ECOD/Domains/P09880_F1_nD4

P09880_F1_nD4

UID: 003176561

AlphaFold

Range: 626-825
AlphaFold: AF-P09880
UniProt: P09880 (all domains)
Gene: TRL1

Protein: tRNA ligase (EC 6.5.1.3)

3D Structure

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Related Domains

Browse other domains in tRNA_lig_CPD →

Classification

AArchitecturebeta barrels(a.1)

XX-groupLigT-like(264)

HH-groupLigT-related(264.1)

TT-groupLigT-related(264.1.1)

FFamilytRNA_lig_CPD(264.1.1.10)

Pfam Families

PF08302tRNA_lig_CPD

Fungal tRNA ligase phosphodiesterase domain

ClanCL02472H

External Links

AlphaFold DB: P09880 UniProt: P09880

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 626-825