ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2pmbC1 - ECOD Domain | ECOD

ECOD/Domains/e2pmbC1

e2pmbC1

UID: 000319698

PDB

Range: C:126-456
PDB: 2PMB chain C(all domains)
UniProt: Q9KTK3 (all domains)
Gene: VC_0899

Molecule: Uncharacterized protein

3D Structure

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Related Domains

Browse other domains in Lysine_decarbox,PpnN_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupMCP/YpsA-related(7563)

HH-groupMCP/YpsA-related(7563.1)

TT-groupMCP/YpsA-related(7563.1.1)

FFamilyLysine_decarbox,PpnN_C(7563.1.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Phosphate ion)

GlycerinGOL
DrugBank DB09462
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03641Lysine_decarbox

Possible lysine decarboxylase

ClanCL0349SLOG

Pyrimidine/purine nucleotide monophosphate nucleosidase, C-terminal

ClanCL0349SLOG

External Links

ECOD PDB View: 2PMB RCSB PDB: 2PMB PDBe: 2PMB UniProt: Q9KTK3

Downloads

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