ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2v2qB2 - ECOD Domain | ECOD

ECOD/Domains/e2v2qB2

e2v2qB2

UID: 000322432

PDB

Range: B:-1-153
PDB: 2V2Q chain B(all domains)
UniProt: O67060 (all domains)
Gene: ispE

Molecule: 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE

3D Structure

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Related Domains

Browse other domains in GHMP_kinases_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein S5 domain 2-like(212)

HH-groupRibosomal protein S5 domain 2-like(212.1)

TT-groupRibosomal protein S5 domain 2-like(212.1.1)

FFamilyGHMP_kinases_N(212.1.1.3)

Ligands

in contact, ≤ 4 Å

Bromide ionBR
4-AMINO-1-(5-{[3-(1H-BENZIMIDAZOL-2-YL)PROPANOYL]AMINO}-5-DEOXY-ALPHA-L-LYXOFURANOSYL)PYRIMIDIN-2(1H)-ONENVG

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL

Pfam Families

PF00288GHMP_kinases_N

GHMP kinases N terminal domain

ClanCL0329S5

External Links

ECOD PDB View: 2V2Q RCSB PDB: 2V2Q PDBe: 2V2Q UniProt: O67060

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.