ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2q3kB1 - ECOD Domain | ECOD

ECOD/Domains/e2q3kB1

e2q3kB1

UID: 000325969

PDB

Range: B:1-99
PDB: 2Q3K chain B(all domains)
UniProt: P03369 (all domains)
Gene: gag-pol

Molecule: Protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

N-{(5S)-5-[{[4-(AMINOMETHYL)PHENYL]SULFONYL}(ISOBUTYL)AMINO]-6-HYDROXYHEXYL}-NALPHA-(METHOXYCARBONYL)-BETA-PHENYL-L-PHENYLALANINAMIDEMUW

+ 2 additives (Acetate, Phosphate ion)

AcetateACT
DrugBank DB14511
Phosphate ion

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 2Q3K RCSB PDB: 2Q3K PDBe: 2Q3K UniProt: P03369

Downloads

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DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.