ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2j9jB1 - ECOD Domain | ECOD

ECOD/Domains/e2j9jB1

e2j9jB1

UID: 000326292

PDB

Range: B:1-99
PDB: 2J9J chain B(all domains)
UniProt: P03369 (all domains)
Gene: gag-pol

Molecule: PROTEASE

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Acetate, Sulfate ion, Glycerol)

AcetateACT
DrugBank DB14511
Sulfate ionSO4
DrugBank DB14546
Glycerol

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 2J9J RCSB PDB: 2J9J PDBe: 2J9J UniProt: P03369

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.