ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2odjB1 - ECOD Domain | ECOD

ECOD/Domains/e2odjB1

e2odjB1

UID: 000329607

PDB

Range: B:3-61,B:96-420
PDB: 2ODJ chain B(all domains)
UniProt: P32722 (all domains)
Gene: oprD

Molecule: Porin D

3D Structure

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Related Domains

Browse other domains in OprD →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOuter membrane meander beta-barrels(5084)

HH-groupPorins(5084.5)

TT-groupPorin(5084.5.1)

FFamilyOprD(5084.5.1.4)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive ((Hydroxyethyloxy)Tri(Ethyloxy)Octane)

(Hydroxyethyloxy)Tri(Ethyloxy)OctaneC8E
DrugBank DB04233

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

outer membrane porin, OprD family

ClanCL0193MBB

External Links

ECOD PDB View: 2ODJ RCSB PDB: 2ODJ PDBe: 2ODJ UniProt: P32722

Downloads

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