ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e2vg0B1 - ECOD Domain | ECOD

ECOD/Domains/e2vg0B1

e2vg0B1

UID: 000331385

PDB

Range: B:30-256
PDB: 2VG0 chain B(all domains)
UniProt: P9WFF5 (all domains)
Gene: Rv1086

Molecule: SHORT-CHAIN Z-ISOPRENYL DIPHOSPHATE SYNTHETASE

3D Structure

Loading viewer...

Related Domains

Browse other domains in Prenyltransf →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupUndecaprenyl diphosphate synthase(7534)

HH-groupUndecaprenyl diphosphate synthase(7534.1)

TT-groupUndecaprenyl diphosphate synthase(7534.1.1)

FFamilyPrenyltransf(7534.1.1.1)

Ligands

in contact, ≤ 4 Å

Geranyl DiphosphateGPP
drugDrugBank DB02552

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF01255Prenyltransf

Putative undecaprenyl diphosphate synthase

External Links

ECOD PDB View: 2VG0 RCSB PDB: 2VG0 PDBe: 2VG0 UniProt: P9WFF5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.