ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2vibA2 - ECOD Domain | ECOD

ECOD/Domains/e2vibA2

e2vibA2

UID: 000333491

PDB

Range: A:1-275
PDB: 2VIB chain A(all domains)
UniProt: Q7SIB6 (all domains)
Gene: glyA

Molecule: SERINE HYDROXYMETHYLTRANSFERASE

3D Structure

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Related Domains

Browse other domains in SHMT →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilySHMT(7577.1.1.5)

Ligands

in contact, ≤ 4 Å

GlycineGLY
drugDrugBank DB00145
Pyridoxal phosphatePLP
drugDrugBank DB00114

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 2VIB RCSB PDB: 2VIB PDBe: 2VIB UniProt: Q7SIB6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.