ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3bq9B1 - ECOD Domain | ECOD

ECOD/Domains/e3bq9B1

e3bq9B1

UID: 000334019

PDB

Range: B:107-450
PDB: 3BQ9 chain B(all domains)
UniProt: A3WM10 (all domains)

Molecule: Predicted Rossmann fold nucleotide-binding domain-containing protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in Lysine_decarbox,PpnN_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupMCP/YpsA-related(7563)

HH-groupMCP/YpsA-related(7563.1)

TT-groupMCP/YpsA-related(7563.1.1)

FFamilyLysine_decarbox,PpnN_C(7563.1.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03641Lysine_decarbox

Possible lysine decarboxylase

ClanCL0349SLOG

Pyrimidine/purine nucleotide monophosphate nucleosidase, C-terminal

ClanCL0349SLOG

External Links

ECOD PDB View: 3BQ9 RCSB PDB: 3BQ9 PDBe: 3BQ9 UniProt: A3WM10

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure