ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3bosB2 - ECOD Domain | ECOD

ECOD/Domains/e3bosB2

e3bosB2

UID: 000334341

PDB

Range: B:11-172
PDB: 3BOS chain B(all domains)
UniProt: A1S6W5 (all domains)
Gene: Sama_1916

Molecule: Putative DNA replication factor

3D Structure

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Related Domains

Browse other domains in Bac_DnaA →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyBac_DnaA(2004.1.1.35)

Ligands

in contact, ≤ 4 Å

Cytidine-5'-DiphosphateCDP
drugDrugBank DB04555
Chloride ionCL
Magnesium ionMG

Pfam Families

PF00308Bac_DnaA

Bacterial DnaA ATPAse domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 3BOS RCSB PDB: 3BOS PDBe: 3BOS UniProt: A1S6W5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Sodium ionNA

metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.