ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2oklB1 - ECOD Domain | ECOD

ECOD/Domains/e2oklB1

e2oklB1

UID: 000334428

PDB

Range: B:1-184
PDB: 2OKL chain B(all domains)
UniProt: Q819K2 (all domains)
Gene: def2

Molecule: Peptide deformylase 2

3D Structure

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Related Domains

Browse other domains in Pep_deformylase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupPeptide deformylase(289)

HH-groupPeptide deformylase(289.1)

TT-groupPeptide deformylase(289.1.1)

FFamilyPep_deformylase(289.1.1.1)

Ligands

in contact, ≤ 4 Å

2-[(Formyl-Hydroxy-Amino)-Methyl]-Heptanoic Acid [1-(2-Hydroxymethyl-Pyrrolidine-1-Carbonyl)-2-Methyl-Propyl]-AmideBB2
drugDrugBank DB04310
Zinc ionZN
metal

Shown in the structure viewer.

Pfam Families

PF01327Pep_deformylase

Polypeptide deformylase

External Links

ECOD PDB View: 2OKL RCSB PDB: 2OKL PDBe: 2OKL UniProt: Q819K2

Downloads

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Drug annotations from DrugDomain.