ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3bp9L1 - ECOD Domain | ECOD

ECOD/Domains/e3bp9L1

e3bp9L1

UID: 000335879

PDB

Range: L:1-131
PDB: 3BP9 chain L(all domains)
UniProt: P03336 (all domains)
Gene: gag

Molecule: Gag protein

3D Structure

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Related Domains

Browse other domains in Gag_p30 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupRetrovirus capsid protein(170)

HH-groupRetrovirus capsid protein N-terminal domain(170.2)

TT-groupRetrovirus capsid protein N-terminal domain(170.2.1)

FFamilyGag_p30(170.2.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Isopropyl alcohol)

GlycerinGOL
DrugBank DB09462
Isopropyl alcoholIPA
DrugBank DB02325

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02093Gag_p30

Gag P30 core shell protein

ClanCL0148Viral_Gag

External Links

ECOD PDB View: 3BP9 RCSB PDB: 3BP9 PDBe: 3BP9 UniProt: P03336

Downloads

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