ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3bs6B1 - ECOD Domain | ECOD

ECOD/Domains/e3bs6B1

e3bs6B1

UID: 000335898

PDB

Range: B:56-329
PDB: 3BS6 chain B(all domains)
UniProt: P25714 (all domains)
Gene: yidC

Molecule: Inner membrane protein oxaA

3D Structure

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Related Domains

Browse other domains in YidC_periplas →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupGlycosyl hydrolase domain-like(12)

HH-groupsupersandwich(12.3)

TT-groupsupersandwich(12.3.1)

FFamilyYidC_periplas(12.3.1.24)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Triethylene glycol, Nonaethylene glycol, 1,2-ETHANEDIOL)

Triethylene glycolPGE
DrugBank DB02327
Nonaethylene glycol2PE
1,2-ETHANEDIOLEDO

Pfam Families

PF14849YidC_periplas

YidC periplasmic domain

ClanCL0103Gal_mutarotase

External Links

ECOD PDB View: 3BS6 RCSB PDB: 3BS6 PDBe: 3BS6 UniProt: P25714

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.