ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2rgmB1 - ECOD Domain | ECOD

ECOD/Domains/e2rgmB1

e2rgmB1

UID: 000336108

PDB

Range: B:6-476
PDB: 2RGM chain B(all domains)
UniProt: Q75I93 (all domains)
Gene: BGLU7

Molecule: Beta-glucosidase

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_1 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGlyco_hydro_1(2002.1.1.12)

Ligands

in contact, ≤ 4 Å

2-deoxy-2-fluoro-α-D-glucoseG2F
drugDrugBank DB04282
Zinc ionZN
metal

+ 3 additives (Glycerin, 2-(N-morpholino)ethanesulfonic acid, Sulfate ion)

Pfam Families

PF00232Glyco_hydro_1

Glycosyl hydrolase family 1

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 2RGM RCSB PDB: 2RGM PDBe: 2RGM UniProt: Q75I93

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

2-(N-morpholino)ethanesulfonic acidMES

DrugBank DB03814

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.