ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2yy8A1 - ECOD Domain | ECOD

ECOD/Domains/e2yy8A1

e2yy8A1

UID: 000338228

PDB

Range: A:1-175
PDB: 2YY8 chain A(all domains)
UniProt: O58214 (all domains)
Gene: PH0461

Molecule: UPF0106 protein PH0461

3D Structure

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Related Domains

Browse other domains in Trm56 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyTrm56(2488.1.1.4)

Ligands

in contact, ≤ 4 Å

5'-S-methyl-5'-thioadenosineMTA
drugDrugBank DB02282
AdemetionineSAM
drugDrugBank DB00118

Shown in the structure viewer.

Pfam Families

tRNA ribose 2'-O-methyltransferase, aTrm56

ClanCL0098SPOUT

External Links

ECOD PDB View: 2YY8 RCSB PDB: 2YY8 PDBe: 2YY8 UniProt: O58214

Downloads

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Drug annotations from DrugDomain.