ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q9VKU8_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q9VKU8_F1_nD2

Q9VKU8_F1_nD2

UID: 003389968

AlphaFold

Range: 121-135,211-395,511-540
AlphaFold: AF-Q9VKU8
UniProt: Q9VKU8 (all domains)
Gene: RluA-2

Protein: Pseudouridylate synthase RPUSD2 (RNA pseudouridylate synthase domain-containing protein 2)

3D Structure

Loading viewer...

Related Domains

Browse other domains in PseudoU_synth_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupPseudouridine synthase(304.102)

TT-groupPseudouridine synthase(304.102.1)

FFamilyPseudoU_synth_2(304.102.1.1)

Pfam Families

PF00849PseudoU_synth_2

RNA pseudouridylate synthase

ClanCL0649PseudoU_synth

External Links

AlphaFold DB: Q9VKU8 UniProt: Q9VKU8

Representative

This domain is classified based on similarity to:

Downloads

Download Domain PDB Download Domain FASTA Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 121-135,211-395,511-540