ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2vi5A1 - ECOD Domain | ECOD

ECOD/Domains/e2vi5A1

e2vi5A1

UID: 000339556

PDB

Range: A:11-160
PDB: 2VI5 chain A(all domains)
UniProt: P9WHE9 (all domains)
Gene: ribH

Molecule: 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE

3D Structure

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Related Domains

Browse other domains in DMRL_synthase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupLumazine synthase(2007.1.13)

FFamilyDMRL_synthase(2007.1.13.1)

Ligands

in contact, ≤ 4 Å

Potassium ionK
metal
1-deoxy-1-{[(5S)-2,6-dioxo-5-(propanoylamino)-1,2,5,6-tetrahydropyrimidin-4-yl]amino}-D-ribitolY19

+ 1 additive (Phosphate ion)

Phosphate ion

Pfam Families

PF00885DMRL_synthase

6,7-dimethyl-8-ribityllumazine synthase

External Links

ECOD PDB View: 2VI5 RCSB PDB: 2VI5 PDBe: 2VI5 UniProt: P9WHE9

Downloads

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DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.