ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3crrA1 - ECOD Domain | ECOD

ECOD/Domains/e3crrA1

e3crrA1

UID: 000340882

PDB

Range: A:3-113,A:199-323
PDB: 3CRR chain A(all domains)
UniProt: Q9HUL9 (all domains)
Gene: miaA

Molecule: tRNA delta(2)-isopentenylpyrophosphate transferase

3D Structure

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Related Domains

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Classification

AArchitecturealpha arrays(a.6)

XX-grouptRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain(3949)

HH-grouptRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain(3949.1)

TT-grouptRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain(3949.1.1)

FFamilyIPPT(3949.1.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
DiphosphateDPO
Magnesium ionMG
metal

Pfam Families

IPP transferase

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 3CRR RCSB PDB: 3CRR PDBe: 3CRR UniProt: Q9HUL9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Tromethamine)

TromethamineTRS
DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.