ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2yy5B1 - ECOD Domain | ECOD

ECOD/Domains/e2yy5B1

e2yy5B1

UID: 000341077

PDB

Range: B:1-346
PDB: 2YY5 chain B(all domains)
UniProt: P75510 (all domains)
Gene: trpS

Molecule: Tryptophanyl-tRNA synthetase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_1b →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilytRNA-synt_1b(2005.1.1.2)

Ligands

in contact, ≤ 4 Å

5'-O-[(L-TRYPTOPHYLAMINO)SULFONYL]ADENOSINEWSA

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00579tRNA-synt_1b

tRNA synthetases class I (W and Y)

ClanCL0039HUP

External Links

ECOD PDB View: 2YY5 RCSB PDB: 2YY5 PDBe: 2YY5 UniProt: P75510

Downloads

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