ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ccuJ1 - ECOD Domain | ECOD

ECOD/Domains/e3ccuJ1

e3ccuJ1

UID: 000342257

PDB

Range: J:4-145
PDB: 3CCU chain J(all domains)
UniProt: P29198 (all domains)
Gene: rpl13

Molecule: 50S ribosomal protein L13P

3D Structure

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Related Domains

Browse other domains in Ribosomal_L13 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRibosomal protein L13/L15p/L18e/L32e(2490)

HH-groupRibosomal protein L13 and L16-A(2490.2)

TT-groupRibosomal protein L13 and L16-A(2490.2.1)

FFamilyRibosomal_L13(2490.2.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Sodium ionNA
metal
Strontium ionSR
metal

Shown in the structure viewer.

Pfam Families

PF00572Ribosomal_L13

Ribosomal protein L13

External Links

ECOD PDB View: 3CCU RCSB PDB: 3CCU PDBe: 3CCU UniProt: P29198

Downloads

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Drug annotations from DrugDomain.