ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2zdhA1 - ECOD Domain | ECOD

ECOD/Domains/e2zdhA1

e2zdhA1

UID: 000342935

PDB

Range: A:115-319
PDB: 2ZDH chain A(all domains)
UniProt: Q5SHZ3 (all domains)
Gene: ddl

Molecule: D-alanine--D-alanine ligase

3D Structure

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Related Domains

Browse other domains in Dala_Dala_lig_C →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyDala_Dala_lig_C(206.1.3.19)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
D-AlanineDAL
drugDrugBank DB01786
Magnesium ion

Pfam Families

PF07478Dala_Dala_lig_C

D-ala D-ala ligase C-terminus

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 2ZDH RCSB PDB: 2ZDH PDBe: 2ZDH UniProt: Q5SHZ3

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.