ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3d9jB1 - ECOD Domain | ECOD

ECOD/Domains/e3d9jB1

e3d9jB1

UID: 000343329

PDB

Range: B:2-136
PDB: 3D9J chain B(all domains)
UniProt: Q9UPN6 (all domains)
Gene: SCAF8

Molecule: RNA-binding protein 16

3D Structure

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Related Domains

Browse other domains in CID →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyCID(109.4.1.70)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Glycerin, Sulfate ion, Ammonium ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546
Ammonium ion

Pfam Families

CID domain

ClanCL0020TPR

External Links

ECOD PDB View: 3D9J RCSB PDB: 3D9J PDBe: 3D9J UniProt: Q9UPN6

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.