ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2z54A1 - ECOD Domain | ECOD

ECOD/Domains/e2z54A1

e2z54A1

UID: 000344772

PDB

Range: A:1-99
PDB: 2Z54 chain A(all domains)
UniProt: P04587 (all domains)
Gene: gag-pol

Molecule: HIV-1 Protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

LopinavirAB1
drugDrugBank DB01601
MercaptoethanolBME
drugDrugBank DB03345

Shown in the structure viewer.

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 2Z54 RCSB PDB: 2Z54 PDBe: 2Z54 UniProt: P04587

Downloads

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Drug annotations from DrugDomain.