ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2vqvB1 - ECOD Domain | ECOD

ECOD/Domains/e2vqvB1

e2vqvB1

UID: 000345676

PDB

Range: B:7-84,B:115-405
PDB: 2VQV chain B(all domains)
UniProt: P56524 (all domains)
Gene: HDAC4

Molecule: HISTONE DEACETYLASE 4

3D Structure

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Related Domains

Browse other domains in Hist_deacetyl →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupArginase/deacetylase(2006.1.5)

FFamilyHist_deacetyl(2006.1.5.2)

Ligands

in contact, ≤ 4 Å

N-hydroxy-5-[(3-phenyl-5,6-dihydroimidazo[1,2-a]pyrazin-7(8H)-yl)carbonyl]thiophene-2-carboxamideHA3
drugDrugBank DB07879
Potassium ionK
metal

Pfam Families

PF00850Hist_deacetyl

Histone deacetylase domain

ClanCL0302Arginase

External Links

ECOD PDB View: 2VQV RCSB PDB: 2VQV PDBe: 2VQV UniProt: P56524

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Zinc ion

metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.