ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2vs1A2 - ECOD Domain | ECOD

ECOD/Domains/e2vs1A2

e2vs1A2

UID: 000346615

PDB

Range: A:66-405
PDB: 2VS1 chain A(all domains)
UniProt: Q9UZR7 (all domains)
Gene: PYRAB10780

Molecule: UNCHARACTERIZED RNA METHYLTRANSFERASE PYRAB10780

3D Structure

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Related Domains

Browse other domains in tRNA_U5-meth_tr →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilytRNA_U5-meth_tr(2003.1.5.53)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

PF05958tRNA_U5-meth_tr

tRNA (Uracil-5-)-methyltransferase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 2VS1 RCSB PDB: 2VS1 PDBe: 2VS1 UniProt: Q9UZR7

Downloads

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Drug annotations from DrugDomain.