ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2k4iA1 - ECOD Domain | ECOD

ECOD/Domains/e2k4iA1

e2k4iA1

UID: 000347055

PDB

Range: A:2-135
PDB: 2K4I chain A(all domains)
UniProt: P04584 (all domains)
Gene: gag-pol

Molecule: HIV-2 myristoylated matrix protein

3D Structure

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Related Domains

Browse other domains in Gag_p17 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupRetroviral matrix proteins(612)

HH-groupRetroviral matrix proteins(612.1)

TT-groupRetroviral matrix proteins(612.1.1)

FFamilyGag_p17(612.1.1.1)

Ligands

in contact, ≤ 4 Å

Myristic acidMYR
drugDrugBank DB08231
(2R)-3-{[(R)-HYDROXY{[(1R,2R,3S,4R,5R,6S)-2,3,6-TRIHYDROXY-4,5-BIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}PROPANE-1,2-DIYL DIBUTANOATEPBU

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00540Gag_p17

gag gene protein p17 (matrix protein)

ClanCL0074Matrix

External Links

ECOD PDB View: 2K4I RCSB PDB: 2K4I PDBe: 2K4I UniProt: P04584

Downloads

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