ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2vdkA1 - ECOD Domain | ECOD

ECOD/Domains/e2vdkA1

e2vdkA1

UID: 000347646

PDB

Range: A:1-452
PDB: 2VDK chain A(all domains)
UniProt: P08514 (all domains)
Gene: ITGA2B

Molecule: INTEGRIN ALPHA-IIB

3D Structure

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Related Domains

Browse other domains in FG-GAP, FG-GAP_3 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-propeller-like(5)

HH-groupbeta-propeller(5.1)

TT-group7-bladed(5.1.4)

FFamilyFG-GAP, FG-GAP_3(5.1.4.257)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Calcium ionCA
metal

+ 1 additive (Glycerin)

Pfam Families

FG-GAP repeat

ClanCL0186Beta_propeller

PF13517FG-GAP_3

FG-GAP-like repeat

ClanCL0186Beta_propeller

External Links

ECOD PDB View: 2VDK RCSB PDB: 2VDK PDBe: 2VDK UniProt: P08514

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.